Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs71864441 chr6:65778831 TTGCTAAAATACATC/T 0 177 15.67 13.6 0.4 KM Plot
PAAD rs71985918 chr1:227511310 CTCTT/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs72064983 chr21:37022471 AAAAT/A 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs7213393 chr17:40307488 T/G 8.84E-5 177 15.57 13.8 4 KM Plot
PAAD rs7216072 chr17:12884646 T/C 2.52E-5 170 16.07 15.53 7.82 KM Plot
PAAD rs7218506 chr17:40307078 T/G 8.84E-5 177 15.57 13.8 4 KM Plot
PAAD rs7257645 chr19:41544948 A/C 7.54E-5 178 9.27 15.67 16.07 KM Plot
PAAD rs72719740 chr8:135562161 G/A 2.28E-6 171 15.57 13.58 1.72 KM Plot
PAAD rs72719752 chr8:135578247 G/A 2.56E-6 174 15.57 14.57 3.43 KM Plot
PAAD rs72719761 chr8:135588911 G/A 2.56E-6 174 15.57 14.57 3.43 KM Plot
PAAD rs72727015 chr9:35655938 C/A 4.29E-7 177 15.23 16.93 3.43 KM Plot
PAAD rs72727021 chr9:35661943 A/C 7.46E-7 174 15.4 16.93 3.43 KM Plot
PAAD rs72746308 chr1:216258916 G/T 0 174 14.9 16.6 0.4 KM Plot
PAAD rs72752215 chr15:93747298 T/G 0.000159 173 15.13 17.45 8.27 KM Plot
PAAD rs72758529 chr15:67063464 C/G 1.73E-5 174 15.55 13.47 3.9 KM Plot